Tosatto, Silvio C.E.: search on Z-Library

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1

QMEAN: A comprehensive scoring function for model quality assessment

Pascal Benkert, Silvio C. E. Tosatto, Dietmar Schomburg

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2008

Language:

english

File:

PDF, 499 KB

english, 2008

2

The Catalytic Site of Glutathione Peroxidases

Tosatto, Silvio C. E., Bosello, Valentina, Fogolari, Federico, Mauri, Pierluigi, Roveri, Antonella, Toppo, Stefano, Flohé, Leopold, Ursini, Fulvio, Maiorino, Matilde

Journal:

Antioxidants & Redox Signaling

Year:

2008

Language:

english

File:

PDF, 468 KB

english, 2008

3

Network analysis of dynamically important residues in protein structures mediating ligand-binding conformational changes

Saldaño, Tadeo E., Tosatto, Silvio C. E., Parisi, Gustavo, Fernandez-Alberti, Sebastian

Journal:

European Biophysics Journal

Year:

2019

Language:

english

File:

PDF, 1.58 MB

english, 2019

4

FRASS: the web-server for RNA structural comparison

Svetlana Kirillova, Silvio CE Tosatto, Oliviero Carugo

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1001 KB

english, 2010

5

A decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators

Federico Fogolari, Silvio CE Tosatto, Giorgio Colombo

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 1.30 MB

english, 2005

6

Improving the quality of protein structure models by selecting from alignment alternatives

Ingolf Sommer, Stefano Toppo, Oliver Sander, Thomas Lengauer, Silvio CE Tosatto

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 534 KB

english, 2006

7

Immune roles of a rhamnose-binding lectin in the colonial ascidian Botryllus schlosseri

Nicola Franchi, Filippo Schiavon, Matteo Carletto, Fabio Gasparini, Giulio Bertoloni, Silvio C.E. Tosatto, Loriano Ballarin

Journal:

Year:

2011

Language:

english

File:

PDF, 1.40 MB

english, 2011

8

Disorder transitions and conformational diversity cooperatively modulate biological function in proteins

Zea, Diego Javier, Monzon, Alexander Miguel, Gonzalez, Claudia, Fornasari, María Silvina, Tosatto, Silvio C. E., Parisi, Gustavo

Journal:

Protein Science

Year:

2016

Language:

english

File:

PDF, 1.83 MB

english, 2016

9

Crohn disease risk prediction-Best practices and pitfalls with exome data

Giollo, Manuel, Jones, David T., Carraro, Marco, Leonardi, Emanuela, Ferrari, Carlo, Tosatto, Silvio C.E.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.16 MB

english, 2017

10

Fine-Grained Statistical Torsion Angle Potentials are Effective in Discriminating Native Protein Structures

Albiero, Alessandro, Tosatto, Silvio

Journal:

Current Drug Discovery Technologies

Year:

2006

Language:

english

File:

PDF, 118 KB

english, 2006

11

Studying Interactions by Molecular Dynamics Simulations at High Concentration

Fogolari, Federico, Corazza, Alessandra, Toppo, Stefano, Tosatto, Silvio C. E., Viglino, Paolo, Ursini, Fulvio, Esposito, Gennaro

Journal:

Journal of Biomedicine and Biotechnology

Year:

2012

Language:

english

File:

PDF, 1.19 MB

english, 2012

12

The RING 2.0 web server for high quality residue interaction networks

Piovesan, Damiano, Minervini, Giovanni, Tosatto, Silvio C.E.

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 2.66 MB

english, 2016

13

A novel approach to investigate the evolution of structured tandem repeat protein families by exon duplication

Paladin, Lisanna, Necci, Marco, Piovesan, Damiano, Mier, Pablo, Andrade-Navarro, Miguel A., Tosatto, Silvio C.E.

Journal:

Journal of Structural Biology

Year:

2020

File:

PDF, 5.63 MB

2020

14

Functional insights from the structural modelling of a small Fe-hydrogenase

Silvio C.E. Tosatto, Giorgio M. Giacometti, Giorgio Valle, Paola Costantini

Journal:

Biochemical and Biophysical Research Communications

Year:

2006

Language:

english

File:

PDF, 420 KB

english, 2006

15

Classification of β-hairpin repeat proteins

Roche, Daniel B., Viet, Phuong Do, Bakulina, Anastasia, Hirsh, Layla, Tosatto, Silvio C.E., Kajava, Andrey V.

Journal:

Journal of Structural Biology

Year:

2017

Language:

english

File:

PDF, 3.08 MB

english, 2017

16

RepeatsDB 2.0: improved annotation, classification, search and visualization of repeat protein structures

Paladin, Lisanna, Hirsh, Layla, Piovesan, Damiano, Andrade-Navarro, Miguel A., Kajava, Andrey V., Tosatto, Silvio C.E.

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 36 KB

english, 2017

17

The MemMoRF database for recognizing disordered protein regions interacting with cellular membranes

Csizmadia, Georgina, ErdÅs, GÃ¡bor, Tordai, Hedvig, PadÃ¡nyi, Rita, Tosatto, Silvio, DosztÃ¡nyi, Zsuzsanna, HegedÅ±s, TamÃ¡s

Journal:

Nucleic Acids Research

Year:

2020

File:

PDF, 715 KB

2020

18

Inhibitory interaction of the 14-3-3 proteins with ubiquitous (PMCA1) and tissue-specific (PMCA3) isoforms of the plasma membrane Ca2+ pump

Cristina I. Linde, Francesca Di Leva, Teuta Domi, Silvio C.E. Tosatto, Marisa Brini, Ernesto Carafoli

Journal:

Year:

2008

Language:

english

File:

PDF, 931 KB

english, 2008

19

Assessing predictors for new post translational modification sites: AÂ case study on hydroxylation

Piovesan, Damiano, Hatos, Andras, Minervini, Giovanni, Quaglia, Federica, Monzon, Alexander Miguel, Tosatto, Silvio C. E., Iakoucheva, Lilia M.

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 2.35 MB

2020

20

Pore formation by yeast mitochondrial ATP synthase involves subunits e, g and b

Carraro, Michela, Checchetto, Vanessa, Sartori, Geppo, Kucharczyk, Roza, di Rago, Jean-Paul, Minervini, Giovanni, Giorgio, Valentina, Petronilli, Valeria, Tosatto, Silvio, Lippe, Giovanna, Szabó, Ildi

Journal:

Biochimica et Biophysica Acta (BBA) - Bioenergetics

Year:

2018

Language:

english

File:

PDF, 73 KB

english, 2018

21

PhytoTypeDB: a database of plant protein inter-cultivar variability and function

Necci, Marco, Piovesan, Damiano, Micheletti, Diego, Paladin, Lisanna, Cestaro, Alessandro, Tosatto, Silvio C E

Journal:

Year:

2018

File:

PDF, 4.89 MB

2018

22

Chasing coevolutionary signals in intrinsically disordered proteins complexes

Iserte, Javier A., Lazar, Tamas, Tosatto, Silvio C. E., Tompa, Peter, Marino-Buslje, Cristina

Journal:

Scientific Reports

Year:

2020

File:

PDF, 1.28 MB

2020

23

LGI1 mutations in autosomal dominant and sporadic lateral temporal epilepsy

Carlo Nobile, Roberto Michelucci, Simonetta Andreazza, Elena Pasini, Silvio C.E. Tosatto, Pasquale Striano

Journal:

Year:

2009

Language:

english

File:

PDF, 275 KB

english, 2009

24

Structural in silico dissection of the collagen V interactome to identify genotype-phenotype correlations in classic Ehlers-Danlos Syndrome (EDS)

Paladin, Lisanna, Tosatto, Silvio C.E., Minervini, Giovanni

Journal:

Year:

2015

Language:

english

File:

PDF, 1.20 MB

english, 2015

25

PhaSePro: the database of proteins driving liquid–liquid phase separation

Mészáros, Bálint, Erdős, Gábor, Szabó, Beáta, Schád, Éva, Tantos, Ágnes, Abukhairan, Rawan, Horváth, Tamás, Murvai, Nikoletta, Kovács, Orsolya P, Kovács, Márton, Tosatto, Silvio C E, Tompa, Péter, Dos

Journal:

Nucleic Acids Research

Year:

2019

File:

PDF, 1.97 MB

2019

26

The E3 ubiquitin-protein ligase MDM2 is a novel interactor of the von HippelâLindau tumor suppressor

Falconieri, Antonella, Minervini, Giovanni, Bortolotto, Raissa, Piovesan, Damiano, Lopreiato, Raffaele, Sartori, Geppo, Pennuto, Maria, Tosatto, Silvio C. E.

Journal:

Scientific Reports

Year:

2020

File:

PDF, 1.97 MB

2020

27

FELLS: fast estimator of latent local structure

Piovesan, Damiano, Walsh, Ian, Minervini, Giovanni, Tosatto, Silvio C. E.

Journal:

Year:

2017

Language:

english

File:

PDF, 407 KB

english, 2017

28

QMEANclust: estimation of protein model quality by combining a composite scoring function with structural density information

Pascal Benkert, Torsten Schwede, Silvio CE Tosatto

Journal:

BMC Structural Biology

Year:

2009

Language:

english

File:

PDF, 1.60 MB

english, 2009

29

Linear motifs in the C-terminus of D. melanogaster cryptochrome

Matthew J. Hemsley, Gabriella M. Mazzotta, Moyra Mason, Stephane Dissel, Stefano Toppo, Mario A. Pagano, Federica Sandrelli, Flavio Meggio, Ezio Rosato, Rodolfo Costa, Silvio C.E. Tosatto

Journal:

Biochemical and Biophysical Research Communications

Year:

2007

Language:

english

File:

PDF, 683 KB

english, 2007

30

The N-terminal half of the receptor domain of botulinum neurotoxin A binds to microdomains of the plasma membrane

Lucia Muraro, Silvio Tosatto, Lisa Motterlini, Ornella Rossetto, Cesare Montecucco

Journal:

Biochemical and Biophysical Research Communications

Year:

2009

Language:

english

File:

PDF, 381 KB

english, 2009

31

VHLdb: A database of von Hippel-Lindau protein interactors and mutations

Tabaro, Francesco, Minervini, Giovanni, Sundus, Faiza, Quaglia, Federica, Leonardi, Emanuela, Piovesan, Damiano, Tosatto, Silvio C. E.

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 941 KB

english, 2016

32

A comprehensive assessment of long intrinsic protein disorder from the DisProt database

Necci, Marco, Piovesan, Damiano, Dosztányi, Zsuzsanna, Tompa, Peter, Tosatto, Silvio C. E.

Journal:

Year:

2017

Language:

english

File:

PDF, 545 KB

english, 2017

33

In silico prediction of blood cholesterol levels from genotype data

Reggiani, Francesco, Carraro, Marco, Belligoli, Anna, Sanna, Marta, dal PrÃ , Chiara, Favaretto, Francesca, Ferrari, Carlo, Vettor, Roberto, Tosatto, Silvio C. E., Passi, Alberto G.

Journal:

Year:

2020

File:

PDF, 1.29 MB

2020

34

The pVHL neglected functions, a tale of hypoxia-dependent and -independent regulations in cancer

Minervini, Giovanni, Pennuto, Maria, Tosatto, Silvio C. E.

Journal:

Year:

2020

File:

PDF, 761 KB

2020

35

The Thioredoxin Specificity of Drosophila GPx: A Paradigm for a Peroxiredoxin-like Mechanism of many Glutathione Peroxidases

Matilde Maiorino, Fulvio Ursini, Valentina Bosello, Stefano Toppo, Silvio C.E. Tosatto, Pierluigi Mauri, Katja Becker, Antonella Roveri, Cristiana Bulato, Louise Benazzi, Antonella De Palma, Leopold F

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 2.11 MB

english, 2007

36

Identification of repetitive units in protein structures with ReUPred

Hirsh, Layla, Piovesan, Damiano, Paladin, Lisanna, Tosatto, Silvio C. E.

Journal:

Year:

2016

Language:

english

File:

PDF, 1.15 MB

english, 2016

37

Ca 2+ binding to F‐ATP synthase β subunit triggers the mitochondrial permeability transition

Giorgio, Valentina, Burchell, Victoria, Schiavone, Marco, Bassot, Claudio, Minervini, Giovanni, Petronilli, Valeria, Argenton, Francesco, Forte, Michael, Tosatto, Silvio, Lippe, Giovanna, Bernardi, Pa

Journal:

Year:

2017

Language:

english

File:

PDF, 1.61 MB

english, 2017

38

ModuleRole: A Tool for Modulization, Role Determination and Visualization in Protein-Protein Interaction Networks

Li, GuiPeng, Li, Ming, Zhang, YiWei, Wang, Dong, Li, Rong, Guimerà, Roger, Gao, Juntao Tony, Zhang, Michael Q., Tosatto, Silvio C. E.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.12 MB

english, 2014

39

RepeatsDB 2.0: improved annotation, classification, search and visualization of repeat protein structures

Paladin, Lisanna, Hirsh, Layla, Piovesan, Damiano, Andrade-Navarro, Miguel A., Kajava, Andrey V., Tosatto, Silvio C.E.

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 1.83 MB

english, 2017

40

A CRY FROM THE KRILL

Mazzotta, Gabriella M., De Pittà, Cristiano, Benna, Clara, Tosatto, Silvio C. E., Lanfranchi, Gerolamo, Bertolucci, Cristiano, Costa, Rodolfo

Journal:

Chronobiology International

Year:

2010

Language:

english

File:

PDF, 585 KB

english, 2010

41

Exploration of alternative splicing events in ten different grapevine cultivars

Potenza, Emilio, Racchi, Milvia Luisa, Sterck, Lieven, Coller, Emanuela, Asquini, Elisa, Tosatto, Silvio C. E., Velasco, Riccardo, Van de Peer, Yves, Cestaro, Alessandro

Journal:

Year:

2015

Language:

english

File:

PDF, 658 KB

english, 2015

42

Development of Scoring Functions for Antibody Sequence Assessment and Optimization

Seeliger, Daniel, Tosatto, Silvio C. E.

Journal:

Year:

2013

Language:

english

File:

PDF, 1009 KB

english, 2013

43

Protein function prediction using guilty by association from interaction networks

Piovesan, Damiano, Giollo, Manuel, Ferrari, Carlo, Tosatto, Silvio C. E.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.03 MB

english, 2015

44

NeEMO: a method using residue interaction networks to improve prediction of protein stability upon mutation

Giollo, Manuel, Martin, Alberto JM, Walsh, Ian, Ferrari, Carlo, Tosatto, Silvio CE

Journal:

Year:

2014

Language:

english

File:

PDF, 640 KB

english, 2014

45

Structural protein reorganization and fold emergence investigated through amino acid sequence permutations

Minervini, Giovanni, Masiero, Alessandro, Potenza, Emilio, Tosatto, Silvio C. E.

Journal:

Year:

2015

Language:

english

File:

PDF, 991 KB

english, 2015

46

Mapping pathogenic mutations suggests an innovative structural model for the pendrin (SLC26A4) transmembrane domain

Bassot, Claudio, Minervini, Giovanni, Leonardi, Emanuela, Tosatto, Silvio C.E.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.00 MB

english, 2016

47

Isoform-specific interactions of the von Hippel-Lindau tumor suppressor protein

Minervini, Giovanni, Mazzotta, Gabriella M., Masiero, Alessandro, Sartori, Elena, Corrà, Samantha, Potenza, Emilio, Costa, Rodolfo, Tosatto, Silvio C. E.

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 1.20 MB

english, 2015

48

Identification and In Silico Analysis of Novel von Hippel-Lindau (VHL) Gene Variants from a Large Population

Emanuela Leonardi, Maddalena Martella, Silvio C.E. Tosatto, Alessandra Murgia

Journal:

Annals of Human Genetics

Year:

2011

Language:

english

File:

PDF, 666 KB

english, 2011

49

In silico investigation of PHD-3 specific HIF1-α proline 567 hydroxylation: A new player in the VHL/HIF-1α interaction pathway?

Minervini, Giovanni, Masiero, Alessandro, Moro, Stefano, Tosatto, Silvio C.E.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.78 MB

english, 2013

50

Align: a C++ Class Library and Web Server for Rapid Sequence Alignment Prototyping

Silvio C.E. Tosatto, Bentham Science Publisher, Albiero, Alessandro, Mantovan, Alessandra, Ferrari, Carlo, Bindewald, Eckart, Toppo, Stefano

Journal:

Current Drug Discovery Technologies

Year:

2006

Language:

english

File:

PDF, 301 KB

english, 2006

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